Earth's Lakes
Earth's lakes play a vital role in the planet's ecology and climate history, serving as repositories of sediment that can reveal past environmental conditions. These bodies of water are formed through various geological processes, including glacial activity, volcanic eruptions, and tectonic shifts. Lakes can be either natural or human-made, with the latter often experiencing faster sediment accumulation. Sediments in lakes are sourced from multiple origins, including materials washed in from surrounding land, chemical precipitates formed within the water, and organic matter produced by aquatic life.
Lake sediments are crucial for understanding historical climate changes, as they contain layers of pollen and other organic materials that have accumulated over time. The study of lakes, known as limnology, encompasses various scientific disciplines, reflecting the complexity of these ecosystems. Seasonal cycles within lakes influence water circulation and sediment deposition, affecting nutrient availability and aquatic life. Furthermore, ongoing research highlights how climate change is impacting lake temperatures and the associated ecological dynamics, indicating the importance of continued study in this area.
Earth's Lakes
Lakes are geologically short-lived features, and sediments deposited in lakes (called lacustrine sediments) have constituted only a tiny fraction of the sedimentary rocks on Earth. Nevertheless, lake sediments are important sources of information about past climates. Several important economic resources—including oil shales, diatomaceous earth, salt and other evaporites, some limestones, and some coals—originate in lakes.

Geological Origin of Lakes
Several geologic mechanisms can create the closed basins that are needed to impound water and produce lakes. The most important of these mechanisms include glaciers, landslides, volcanoes, rivers, subsidence, and tectonic processes.
Continental glaciers formed thousands of lakes by the damming of stream valleys with moraine materials. Glaciers also scoured depressions in softer bedrock, and these later filled with water to form lakes. Depressions called kettles formed when buried ice blocks melted. Mountain glaciers also continue to produce numerous small, high alpine lakes by plucking away bedrock. The bowl-shaped depressions that occur as a result of this plucking are called cirques; lakes that occupy cirques are called tarns. Sometimes, a mountain glacier moves down a valley and carves a series of depressions along the valley that, from above, look like a row of beads along a string. When these depressions later fill with water, the lakes are called paternoster lakes, the name (Latin for “our father”) coming from their similarity to beads on a Christian rosary.
Landslides sometimes form natural dams across stream valleys. Large lakes then pond up behind the dam. Volcanoes may produce lava flows that dam stream valleys and produce lakes. A volcanic explosion crater may fill with water and so produce a lake. After an eruption, the area around the eruption vent may collapse to form a depression called a caldera. Some calderas, such as Crater Lake in Oregon, fill with water. Rivers can produce lakes along their valleys when the loop of a meandering channel finally is enclosed by sediment and leaves behind an oxbow lake, isolated from the main channel. Sediment may accumulate at the mouth of a stream, and the resulting delta may build, bridging across irregularities in the shoreline, to create a brackish coastal lake.
Natural subsidence creates closed basins in areas underlain by soluble limestones or evaporite deposits. As the underlying limestone dissolves, the ground above collapses into the cavity, forming a sinkhole that may later fill with water. Finally, large-scale downwarping of tectonic plates has produced some very large lakes. Large basins form when the crust warps or sinks downward in response to deep forces. The subsidence produces very large closed basins that can hold water. A few immense lakes owe their origins to tectonic downwarping.
With few exceptions, most lakes exist in relatively small depressions and serve as the catch basins for sediment from the entire watershed or drainage basin around them. The natural process of sedimentation ensures that most lakes fill with sediment before long periods of geologic time have passed. Lakes with areas of only a few square kilometers or less will fill within a few tens of thousands of years. Very large lakes and inland seas may endure for more than 10 million years. Human-made lakes and reservoirs have unusually high sediment-fill rates in comparison with most natural lakes. Human-made lakes may fill with sediment within a few decades to a few centuries.
Lake sediments come from four sources: allogenic clastic materials that are washed in from the surrounding watershed; endogenic chemical precipitates that are produced from dissolved substances in the lake waters; endogenic biogenic organic materials produced by plants and animals living in the lake; and aeolian or airborne substances, such as dust and pollen, transported to the lake in the atmosphere.
Allogenic clastic materials are mostly mineral in nature, produced when rocks and soils in the drainage basin are weathered by mechanical and chemical processes to yield small particles. These particles are moved downslope by gravity, wind, and running water to enter streams, which then transport them to the lake. Clastic materials also enter the lake via waves, which erode the materials from the shoreline, and via landslides that directly enter the lake. In winter, ice formed on the lake can expand and push its way a few centimeters to 1 meter (3 feet) or so onto the shore. There, the ice may pick up large particles, such as gravel and cobbles. When the spring thaw comes, waves can remove that ice, together with its enclosed particles, and float it out onto the lake. The process by which the large particles are transported out on the lake is called ice-rafting. As the ice melts, the large clastic particles drop to the bottom. They are termed dropstones when found in lake sediments. A landslide into a lake or a flood in a stream that feeds into the lake can produce water heavily laden with sediment. The sediment-laden water is denser than clean water and therefore can rush down and across the lake bottom at speeds sufficient to carry even coarse sand far out into the lake. These types of deposits are called turbidite deposits.
Endogenic chemical precipitates in freshwater lakes commonly consist of carbonate minerals (calcite, aragonite, or dolomite) and mineraloids that consist of oxides and hydroxides of iron, manganese, and aluminum. In some saline and brine lakes, the main sediments may be carbonates, together with sulfates such as gypsum (hydrated calcium sulfate), thenardite (sodium sulfate), or epsomite (hydrated magnesium sulfate), or with chlorides such as halite (sodium chloride) or more complex salts. Of the endogenic precipitates, calcite is the most abundant. Its precipitation represents a balance between the carbon dioxide content of the atmosphere and that of the carbon dioxide dissolved in the lake water.
Diatoms are distinctive microscopic algae that produce a frustule (a kind of shell) made of silica glass that is highly resistant to weathering. When seen under a high-powered microscope, diatom frustules appear to be artwork, looking like beautiful and highly ornate saucer- and pen-shaped works of glass. A tiny spot of lake sediment may contain millions of diatoms.
A lake’s sediment may contain from less than 1 percent to more than 90 percent organic materials, depending upon the type of lake. Most organic matter in lake sediments is produced within the lake by plankton and consists of compounds such as carbohydrates, proteins, oils, and waxes that are made up of carbon, hydrogen, nitrogen, and oxygen, with a little phosphorus. Plankton has an approximate bulk composition of 36 percent carbon, 7 percent hydrogen, 50 percent oxygen, 6 percent nitrogen, and 1 percent phosphorus (by weight). Plankton includes microscopic plants (phytoplankton) and microscopic animals ( zooplankton) that live in the water column. Lakes that are very high in nutrients (eutrophic lakes) commonly have heavy blooms of algae, which contribute much organic matter to the bottom sediment. Terrestrial (land-derived) organic material such as leaves, bark, and twigs form a minor part of the organic matter found in most lakes. Terrestrial organic material is higher in carbon and lower in hydrogen, nitrogen, and phosphorus than is planktonic organic matter.
Airborne substances usually constitute only a tiny fraction of lake sediment. The most important of such material is pollen and spores. Pollen usually constitutes less than 1 percent of the total sediments, but that tiny amount is a very useful component for learning about the past climates that have existed on Earth. Pollen is among the most durable of all natural materials. It survives attack by air, water, and even strong acids and bases. Thus, it remains in sediment through geologic time. As pollen accumulates in the bottom sediment, the lake serves as a kind of recorder for the vegetation that existed around it at a given time. By taking a long core of the bottom sediment from certain types of lakes and identifying the various pollen grains that it contains, a geologist may look at the pollen changes that have occurred through time and reconstruct the history of the climate and vegetation in an area.
Volcanic ash thrown into the atmosphere during eruptions enters lakes and forms a discrete layer on the lake bottom. When Mount St. Helens erupted in 1980, it deposited several centimeters of ash in lakes more than 160 kilometers (100 miles) east of the volcano. Geologists have used layers of ash in lakes to reconstruct the history of volcanic eruptions in some areas. Although dust storms contribute sediment to lakes, such storms are usually too infrequent in most areas to contribute significant amounts. In addition to wind-blown dust, a constant rain of tiny particles enters the atmosphere from space as micrometeorites, some of which reach the surface and become a component of lake and seafloor sediments.
Water Circulation
Lake waters are driven into circulation by temperature-induced density changes and by wind. Most freshwater lakes in temperate climates circulate completely twice each year and so are termed dimictic lakes. Circulation exerts a profound influence on water chemistry of the lake and the amount and type of sediment present within the water column. During summer, lakes become thermally stratified into three zones. The upper layer of warm water (epilimnion) floats above the denser cold water and prevents wind-driven circulation from penetrating much below the epilimnion. The epilimnion is usually in circulation, is rich in oxygen (from algal photosynthesis and diffusion from the atmosphere), and is well-lit. This layer is where summer blooms of green and blue-green algae occur and calcite precipitation begins. The middle layer (thermocline) is a transition zone in which the water cools downward at a rate of greater than 1 degree Celsius per meter. The bottom layer (hypolimnion) is cold, dark, stagnant, and usually poor in oxygen. There, bacteria decompose the bottom sediment and release phosphorus, manganese, iron, silica, and other constituents into the hypolimnion.
Sediment deposited in summer includes a large amount of organic matter, clastic materials washed in during summer rainstorms, and endogenic carbonate minerals produced within the lake. The most common carbonate mineral is calcite (calcium carbonate). The regular deposition of calcite in the summer is an example of cyclic sedimentation, a sedimentary event that occurs at regular time intervals. This event occurs yearly in the summer season and takes place in the upper 2 or 3 meters (6 1/2 to 10 feet) of water. On satellite photos, it is even possible to see these summer events as whitenings on large lakes, such as Lake Michigan.
As the sediment falls through the water column in summer, it passes through the thermocline, into the hypolimnion, and onto the lake bottom. As it sits on the bottom during the summer months, bacteria, particularly anaerobic bacteria (those that thrive in oxygen-poor environments), begin to decompose the organic matter. As this occurs, the dissolved carbon dioxide increases in the hypolimnion. If enough carbon dioxide is produced, the hypolimnion becomes slightly acidic, and calcite and other carbonates that fell to the bottom begin to dissolve. This is essentially the same process that occurs at the carbonate compensation depths of the oceans. The acidic conditions also release dissolved phosphorus, calcium, iron, and manganese into the hypolimnion, as well as some trace metals. Clastic minerals such as quartz, feldspar, and clay minerals are not affected in such brief seasonal processes, but some silica from biogenic material such as diatom frustules can dissolve and enrich the hypolimnion in silica. As summer progresses, the hypolimnion becomes more and more enriched in dissolved metals and nutrients.
Autumn circulation begins when the water temperature cools and the density of the epilimnion increases until it reaches the same temperature and density as the deep water. Thereafter, there is no stratification to prevent the wind from circulating the entire lake. When this happens, the cold, stagnant hypolimnion, now rich in dissolved substances, is swept into circulation with the rest of the lake water. The dissolved materials from the hypolimnion are mixed into a well-oxygenated water column. Iron and manganese that formerly were present in dissolved form now oxidize to form tiny solid particles of manganese oxides, iron oxides, and hydroxides. The sediment therefore becomes enriched in iron, manganese, or both during the autumn overturn, with the amount of enrichment depending upon the amount of dissolved iron and manganese that accumulated during summer in the hypolimnion. Dissolved silica is also swept from the hypolimnion into the entire water column. In the upper water column, where sunlight and dissolved silica become present in great abundance, diatom blooms occur. The diatoms convert the dissolved silica into solid opaline frustules.
As circulation proceeds, the currents may sweep over the lake bottom and actually resuspend 1 centimeter or more of sediment from the bottom and margins of the lake. The amount of resuspension that occurs each year in freshwater lakes is primarily the result of the shape of the lake basin. A lake that has a large surface area and is very shallow permits wind to keep the lake in constant circulation over long periods of the year.
As winter stratification develops, an ice cover forms over the lake and prevents any wind-induced circulation. Because the circulation is what keeps the lake sediment in suspension, most sediment quickly falls to the bottom, and sedimentation then is minimal through the rest of winter. If light can penetrate the ice and snow, some algae and diatoms can utilize this weak light, present in the layer of water just below the ice, to reproduce. Their settling remains contribute small amounts of organic matter and diatom frustules. At the lake bottom, the densest water (that at 4 degrees Celsius) accumulates. As in summer, some dissolved nutrients and metals can build up in this deep layer, but because the bacteria that are active in releasing these substances from the sediment are refrigerated, they work slowly, and not as much dissolved material builds up in the bottom waters.
When spring circulation begins, the ice at the surface melts, and the lake again goes into wind-driven circulation. Oxidation of iron and manganese occurs (as in autumn), although the amounts of dissolved materials available are likely to be less in spring. Once again, nutrients such as phosphorus and silica are circulated out of the dark bottom waters and become available to produce blooms of phytoplankton. Spring rains often hasten the melting, and runoff from rain and snowmelt in the drainage basin washes clastic materials into the lake. The period of spring thaw is likely to be the time of year when the maximum amount of new allogenic (externally derived) sediment enters the lake.
Spring diatom blooms continue until summer stratification prevents further replenishment of silica to the epilimnion. Thereafter, the diatoms are succeeded by summer blooms of green algae, closely followed by blooms of blue-green algae. Silica is usually the limiting nutrient for diatoms; phosphorus is the limiting nutrient for green and blue-green algae.
After sediments are buried, changes occur. This process of change after burial is termed diagenesis. Physical changes include compaction and de-watering. Bacteria decompose much organic matter and produce gases such as methane, hydrogen sulfide, and carbon dioxide. The “rotten-egg” odor of black lake sediments, often noticed on boat anchors, is the odor of hydrogen sulfide. After long periods of time, minerals such as quartz or calcite slowly fill the pores remaining after compaction.
One of the first diagenetic minerals to form is pyrite (iron sulfide). Much pyrite occurs in microscopic spherical bodies that look like raspberries; these particles, called framboids (from the French framboise, meaning “raspberry”), are probably formed by bacteria in areas with low oxygen within a few weeks. In fact, the black color of some lake muds and oozes results as much from iron sulfides as from organic matter. Other diagenetic changes include the conversion of mineraloid particles containing phosphorus into phosphate minerals such as vivianite and apatite. Manganese oxides may be converted into manganese carbonates (rhodochrosite). Freshwater manganese oxide nodules may form in high-energy environments such as Grand Traverse Bay in Lake Michigan.
Study of Lakes
Scientists who study lakes (limnologists) must study all the natural sciences, including physics, chemistry, biology, meteorology, and geology because lakes are complex systems that include biological communities, changing water chemistry, geological processes, and interactions among water, sunlight, and the atmosphere.
Modern lake sediments are collected from the water column in sediment traps (cylinders and funnels into which the suspended sediment settles over periods of days or weeks) or by filtering large quantities of lake water. Living material is often sampled with a plankton net. Older sediments that have accumulated on the bottom are collected with dredges and by piston coring, which involves pushing a sharpened hollow tube (usually about 2.5 centimeters, or about 1 inch, in diameter) downward into the sediment. Cores are valuable because they preserve the sediment in the order in which it was deposited, from oldest at the bottom to the most recent at the top. Once the sample is collected, it is often frozen and taken to the laboratory. There, pollen and organisms may be examined by microscopy, minerals may be determined by X-ray diffraction, and chemical analyses may be made.
Varves are thin laminae that are deposited by cyclic processes. In freshwater lakes, each varve represents one year’s deposit; it consists of a couplet with a dark layer of organic matter deposited in winter and a light-colored layer of calcite deposited in summer. Varves are deposited in lakes where annual circulations cannot resuspend bottom sediment and, therefore, cannot mix it to destroy the annual lamination. Some lakes that are small and very deep may produce varved sediments; Elk Lake in Minnesota is an example. In other lakes, the accumulation of dissolved salts on the bottom eventually produces a dense layer (monimolimnion), which prevents disturbance of the bottom by circulation in the overlying fresher waters. Soap Lake in Washington State is an example. Because each varve couplet represents one year, a geologist may core the sediments from a varved lake and count the couplets to determine the age of the sediment in any part of the core. The pollen, the chemistry, the diatoms, and other constituents may then be carefully examined to deduce what the lake was like during a given time period. The study is much like solving a mystery from a variety of clues. Eventually, scientists may be able to learn the history of climate changes of an area because of the study of lake varves.
Lakes are also being studied because of global warming and the changing dynamics within bodies of water. For example, in many lakes the annual temperature is rising. This change in temperature affects marine life as well as plant life in the lakes.
Principal Terms
allogenic sediment: sediment that originates outside the place where it is finally deposited; sand, silt, and clay carried by a stream into a lake are examples
biogenic sediment: sediment that originates from living organisms
clastic sediments: sediments composed of durable minerals that resist weathering
clay: a mineral group whose particles consist of structures arranged in sandwichlike layers, usually sheets of aluminum hydroxides and silica, along with some potassium, sodium, or calcium ions
clay minerals: any mineral particle less than 2 micrometers in diameter
endogenic sediment: sediment produced within the water column of the body in which it is deposited; for example, calcite precipitated in a lake in summer
mineral: a solid with a constant chemical composition and a well-defined crystal structure
mineraloid: a solid substance with a constant chemical composition but without a well-ordered crystal structure
plankton: plant and animal organisms, most of which are microscopic, that live within the water column
seston: a general term that encompasses all types of suspended lake sediment, including minerals, mineraloids, plankton, and organic detritus
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